PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17360.1
Common NameLR48_Vigan01g308200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 132aa    MW: 14854.6 Da    PI: 5.3432
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.15.9e-5418113297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdr+lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy++pl+ yl++yrele +
  Vang11g17360.1  18 REQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLHRYRELEVD 112
                     89*******************************************************************************************98 PP

           NF-YB  97 k 97 
                     +
  Vang11g17360.1 113 R 113
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.6E-5211126IPR009072Histone-fold
SuperFamilySSF471136.37E-3920128IPR009072Histone-fold
PfamPF008082.8E-272387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.2E-185169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.2E-187088No hitNo description
PRINTSPR006154.2E-1889107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MVDNVGGSSS NPENSGIREQ DRLLPIANVG RIMKQILPPN AKISKESKET MQECVSEFIS  60
FVTSEASEKC RKERRKTVNG DDICWALGSL GFDDYADPLR RYLHRYRELE VDRSAIQERG  120
NSPSKDKDAE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4517108192Transcription factor HapC (Eurofung)
4g92_B5e-4517108192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506750.12e-92PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822485e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0L9TSQ66e-94A0A0L9TSQ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9T86e-94A0A0S3R9T8_PHAAN; Uncharacterized protein
STRINGGLYMA07G37840.26e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-49nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]